FastQCFastQC Report
Wed 31 May 2023
EGAF00007941365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453681
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22980.5065233060233953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11090.2444448852828309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10870.23959566303195418No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.1485625362314049No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6480.14283163720764147No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6450.1421703796279765No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5960.1313698391601147No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4990.10998917741761281No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4740.10447869758707108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4650.10249492484807607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)