FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460803
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15370.3335481756846201No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10110.21939961328376767No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9910.21505936376282273No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9370.20334069005627137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8420.18272450483178276No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7360.15972118237077448No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6550.1421431718109474No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5500.11935686182598637No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5430.11783777449365565No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5370.11653569963737216No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5200.11284648754456893No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5100.11067636278409645No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5010.10872325049967123No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4890.10611910078710425No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4880.105902088311057No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4880.105902088311057No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4850.10525105088291527No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4750.10308092612244278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)