FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460803
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23370.5071581565224185No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22200.48176769682489046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15460.3355012879690453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10340.22439090023285438No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9910.21505936376282273No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9620.20876600195745254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8880.19270707872995618No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7410.1608062447510107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6850.14865354609236484No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.12630126105949832No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5710.12391412382297858No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.1221780240146006No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5630.1221780240146006No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5520.11979088677808088No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5490.11913984934993913No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5310.11523362478108867No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5170.11219545011642719No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4980.10807221307152948No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4800.10416598850267902No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4770.10351495107453729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)