FastQCFastQC Report
Wed 31 May 2023
EGAF00007941369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410595
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47481.156370632862066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11370.2769152084170533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11090.27009583652991387No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9350.22771831123126196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9260.22552637026753858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9160.22309088030784593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8370.20385050962627407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8070.19654403974719614No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7150.17413753211802385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.16244718031149916No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.1500261815170667No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5740.1397971236863576No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5440.13249065380727967No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5400.13151645782340263No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5310.12932451685967924No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5170.12591483091610955No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4720.11495512609749266No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4460.1086228522022918No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4420.10764865621841473No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4380.10667446023453768No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4350.1059438132466299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)