FastQCFastQC Report
Sun 21 May 2023
EGAF00007941371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407064
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43741.0745239077884559No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG16080.39502387830906194No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA9880.24271367647347836No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8030.19726627753866716No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7260.17835033311715112No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5960.14641432305485133No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5630.13830748973134446No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5140.1262700705540161No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5100.1252874240905607No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5010.12307646954778609No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4720.1159522826877346No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4580.11251302006564078No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4380.10759978774836389No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4210.10342354027867853No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4190.10293221704695085No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4160.1021952321993593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)