FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475045
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT20130.42374932901093576No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17220.3624919744445263No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16350.3441779199865276No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12320.25934385163510826No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12300.25892283888894735No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10370.21829510888442147No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9310.1959814333378943No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9180.1932448504878485No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6950.1463019292909093No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6630.13956572535233502No Hit
TGCCTGGTCCGGACCCCATTCACGACCTTGCTGTTCTTTATACT6390.13451357239840436No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6000.126303823848267No Hit
GCGTGGAGATGCTTCCGGACCACGTTCACGACCTTGCTGTTCTT5370.11304192234419896No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5340.11241040322495764No Hit
CGGAGATGCTTCCGGACCGCGTTCACGGCCCTGCTGTTCTTTGT5320.11198939047879675No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4910.1033586291824985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)