FastQCFastQC Report
Wed 31 May 2023
EGAF00007941375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475045
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25260.5317390984012041No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23400.4925849130082413No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20440.43027502657642963No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16960.35701880874443476No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16340.3439674136134471No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13490.2839730972855203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12470.2625014472313149No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9580.20166510541106633No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8320.17514130240293024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7220.15198560136408132No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6960.14651243566398972No Hit
CAGCGTGGCCGCGACCGCCAGGATCCACAGC6740.14188129545621994No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6670.14040775084465681No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5770.12146217726741676No Hit
GGCCGCGACCGTCAGGATCCGCAACAGCAGT5680.11956761990969277No Hit
CGTGGTCGTGATCGTCAGGACCCGCAGCAAC5680.11956761990969277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5090.10714774389794651No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4920.10356913555557895No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4780.10062204633245271No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4760.10020103358629182No Hit

[OK]Adapter Content

Adapter graph