FastQCFastQC Report
Sun 21 May 2023
EGAF00007941378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416844
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14460.34689236261047296No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14100.33825603823012923No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12800.30706931130111026No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11540.2768421759699072No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10840.2600493230081278No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9290.22286514859275894No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8620.20679198932934142No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8620.20679198932934142No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8380.20103443974244561No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7910.18975923846810797No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6570.157612919941273No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6410.15377455355000913No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.1446584333707574No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6030.1446584333707574No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5960.14297914807457945No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5910.1417796585773095No Hit
CACACCGTTCAGCTGCTGGGTGTGTTCATCAGCTTCGTTGTATT5470.13122415100133383No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5360.12858527410733991No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5340.12810547830843194No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5250.125946397213346No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5230.12546660141443802No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5010.1201888476264502No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4970.11922925602863423No Hit
AACACACTGGCCGTTGCGGCAGACGTAGTTAGTACGGCCAACCA4940.11850956233027223No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4540.10891364635211255No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4340.1041156883630327No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4280.10267630096630874No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4260.10219650516740077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)