FastQCFastQC Report
Sun 21 May 2023
EGAF00007941379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416844
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45481.0910556467167574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24680.5920680158524533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20930.502106303557206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15290.36680388826515437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12740.3056299239043863No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11860.28451890875243496No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9890.23725902255999848No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9890.23725902255999848No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.2235848422911209No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8400.2015142355413536No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7690.18448148468012013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7520.18040322038940226No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6940.1664891422210707No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6840.1640901632265308No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6560.157373022041819No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6360.15257506405273916No Hit
CGTGAAGGCGCGAAAAACACCAACAAACAGC6310.15137557455546918No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6220.14921649346038324No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6070.14561802496857337No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5620.13482261949314372No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5590.13410292579478175No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5350.12834537620788591No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5200.12474690771607604No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5060.12138833712372013No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG4700.11275201274337641No Hit
CTGCACCATGTGGACGTAGATCCGTCCGGTA4640.11131262534665246No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4620.11083282954774448No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4590.11011313584938251No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4440.10651466735757262No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4230.10147681146903877No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4220.1012369135695848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4170.10003742407231483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)