FastQCFastQC Report
Wed 31 May 2023
EGAF00007941380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472156
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8370.1772719186031735No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7990.16922373113970807No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6260.13258329874024688No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5980.12665305534611443No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5820.1232643448351816No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5510.11669871822024924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)