FastQCFastQC Report
Wed 31 May 2023
EGAF00007941381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472156
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23810.5042824829081913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11870.25139996102982914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9810.20777031320156897No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8450.17896627385863992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6440.1363955980650463No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6260.13258329874024688No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6190.13110073789171375No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6140.13004176585704727No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.10907411957065039No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.10335567058345123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)