FastQCFastQC Report
Sun 21 May 2023
EGAF00007941383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457888
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49261.0758089314417498No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15750.34397057795792857No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12040.2629463973722832No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10970.23957823747291918No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10330.22560102033685092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.19240512963868894No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8800.19218673562093785No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8540.18650849115941015No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8380.18301418687539311No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7560.16510587741980573No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6370.13911698930742888No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6230.13605947305891397No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.1308180166328884No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5980.13059962261513733No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.13038122859738627No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5790.12645013627786708No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5430.11858795163882871No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5390.11771437556782445No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5350.11684079949682018No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4990.10897861485778182No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4960.10832343280452862No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4760.1039555524495073No Hit

[OK]Adapter Content

Adapter graph