FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462331
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21730.47000958187964903No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16720.3616456607928086No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13460.29113340874827776No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13180.2850771417015082No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13050.28226530342979383No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12960.2803186461647607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12000.2595543020044081No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11560.25003731093091314No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10100.21845820418704345No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10050.21737672792869178No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9840.21283452764361463No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9300.20115458405341627No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7960.1721710203295907No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7220.15616517170598554No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7150.15465110494429316No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7070.15292074293093044No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6520.14102450408906173No Hit
CAGTGCCTGCAGGTCTTCAGTTTTCATGTAGCCGGACAGGCCAG6370.13778007531400663No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5980.12934456049886336No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5520.11939497892202772No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5200.11247353086857684No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5200.11247353086857684No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5160.11160834986189548No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4900.10598467331846663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)