FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462331
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30850.6672708514029991No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24090.5210552612738493No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23520.5087264319286399No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22030.47649843942975917No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14330.3099510956435973No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14240.3080044383785643No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13180.2850771417015082No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12630.27318090285963953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11220.24268327237412157No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10390.22473076648548335No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9840.21283452764361463No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9680.2093738036168892No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8850.19142129772825098No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8210.1775784016213492No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8200.17736210636967886No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7160.1548674001959635No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6690.1447015233674575No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6680.14448522811578718No Hit
GAAAACGCTGCGTACTATCAGGTAGTTCCGG6330.13691489430732526No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6060.13107492251222608No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5400.11679943590198365No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5370.11615055014697262No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5320.11506907388862092No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5210.11268982612024718No Hit

[OK]Adapter Content

Adapter graph