FastQCFastQC Report
Wed 31 May 2023
EGAF00007941389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438380
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26380.6017610292440349No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22130.5048131757835668No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20840.47538665085085996No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16510.37661389661937134No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16280.37136730690268716No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16200.36954240613166656No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14550.3319038277293672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13020.2970026004835987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12450.2840001824900771No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12190.2780692549842602No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11660.26597928737624893No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11280.25731100871390117No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10960.2500114056298189No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG9950.22697203339568411No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8880.20256398558328392No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8770.2000547470231306No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8680.19800173365573248No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8460.1929832565354259No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7980.18203385190930244No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7780.177471599981751No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7580.17290934805419955No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7400.16880332131940326No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7340.16743464574113784No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7110.1621880560244537No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6570.14986997582006478No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6510.14850130024179936No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6460.1473607372599115No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6370.14530772389251334No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6190.14120169715771705No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5780.1318490807062366No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5730.13070851772434874No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5690.12979606733883844No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5630.12842739176057302No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5240.11953100050184771No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5220.11907477530909256No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4680.10675669510470367No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4590.10470368173730554No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4540.10356311875541768No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4480.10219444317715225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)