FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448862
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12840.2860567390422892No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11850.2640009624338884No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10570.23548440277858226No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10120.22545904977476372No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9510.21186912681403192No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8620.1920412064287019No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8120.18090192531334798No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8040.17911964033489133No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7430.16552971737415953No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7350.1637474323957029No Hit
TTGGGATACAATGGTAGAACGCAGCTGCAGACCGCCGCTACCTG6230.1387954426973101No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6100.13589922960731807No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6010.13389415900655435No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5590.12453716286965703No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5310.11829916544505883No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5110.11384345299891725No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4690.10448645686201995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)