FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448862
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27480.6122148900998525No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22810.5081740044824468No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17120.3814089853897189No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14380.3203657248775793No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11530.25687182252006185No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9650.21498812552633104No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8480.1889222077164028No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8450.18825385084948157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8420.18758549398256033No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8240.18357535278103293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7830.1744411422664427No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7370.16419300364031705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7250.16151957617263213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6880.1532765081472702No Hit
AATGGCGACACCACCATCAACGGTCAGCTGA6510.14503344012190827No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6470.14414229763267997No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5830.12988401780502692No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5820.12966123218271985No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5610.1249827341142712No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5450.12141816415735794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4740.10560038497355534No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4670.10404088561740579No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4670.10404088561740579No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4520.1006991012827996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)