FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425461
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12090.28416235565657016No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11130.2615985954059244No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9840.23127854256911914No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9240.21717619241246552No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8430.19813801970098316No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8160.19179196213048905No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7330.17228371108045157No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7250.1704033977262311No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7030.16523253600212476No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6600.15512585172318966No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6400.15042506833763847No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6120.14384397159786677No Hit
TTGGGATACAATGGTAGAACGCAGCTGCAGACCGCCGCTACCTG5980.14055342322798095No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5400.12692115140988247No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5140.1208101330086659No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4540.10670778285201228No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4460.10482746949779181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)