FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425461
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46881.1018636255732017No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26600.6252041902783099No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16410.38569927678447613No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13770.32364893609520023No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9520.22375728915223722No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9500.2232872108136821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.19907817637809339No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7490.17604433778889253No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7490.17604433778889253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7470.17557425945033742No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7180.16875812354128816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7170.1685230843720106No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7120.1673478885256228No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6660.15653608673885502No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6600.15512585172318966No Hit
AATGGCGACACCACCATCAACGGTCAGCTGA6240.1466644416291975No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6090.1431388540900341No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5290.12433572054782929No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5230.12292548553216394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4970.11681446713094738No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4740.1114085662375635No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4480.10529754783634693No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4370.10271211697429376No Hit

[OK]Adapter Content

Adapter graph