FastQCFastQC Report
Wed 31 May 2023
EGAF00007941394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433883
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12600.2904008684368828No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11190.2579036283975173No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10470.24130929305826687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9650.22241018892189832No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9040.20835109925947778No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9040.20835109925947778No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8030.1850729344085848No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7660.17654528985924775No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7020.16179476955769181No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6900.15902904700115006No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6810.15695475508374376No Hit
TTGGGATACAATGGTAGAACGCAGCTGCAGACCGCCGCTACCTG5910.13621183590968072No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5710.13160229831544448No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5250.12100036184870115No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5110.11777368553273578No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5050.1163908242544649No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4530.1044060265094507No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4390.10117935019348534No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4390.10117935019348534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)