FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438741
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21870.4984717635233543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8390.19122899387109935No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7590.17299500160687056No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7040.16045913192521327No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6560.14951873656667602No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5770.13151266920575008No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5560.12672624623639003No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5280.12034434894390997No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4660.10621300493913266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)