FastQCFastQC Report
Sun 21 May 2023
EGAF00007941403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438390
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31510.718766395218869No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.5059421975866238No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20790.4742352699650996No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16930.38618581628230575No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13430.3063482287460937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12850.29311799995437854No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12790.29174935559661486No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12540.28604667077259976No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11510.26255160929765736No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10130.23107278906909376No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9650.22012363420698464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9190.20963069413079677No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6790.15488491982025138No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6760.15420059764136956No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5740.13093364355938775No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5720.13047742877346655No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5170.11793152216063323No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4910.11200072994365748No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4410.10059536029562718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)