FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297860
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13370.44886859598469075No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9660.324313435842342No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7540.2531390586181428No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6370.2138588598670516No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5930.19908681931108574No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5070.1702141945880615No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4930.16551399986570872No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT4830.162156717921171No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4670.1567850668099107No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4370.1467132209762976No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4290.14402739542066745No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4250.14268448264285236No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4060.13630564694823072No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4020.13496273417041563No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3980.13361982139260054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3950.13261263680923924No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3940.13227690861478547No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG3790.12724098569797893No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA3740.12556234472571007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT3570.11985496541999598No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3400.11414758611428188No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG3390.11381185791982812No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT3280.11011884778083664No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3070.10306855569730745No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC3060.10273282750285369No Hit
TTTCAGCTGCTGTTTTTCACGCTGTACCACTTCATCGTCAACAC3060.10273282750285369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)