FastQCFastQC Report
Sun 21 May 2023
EGAF00007941405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297860
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16010.5375008393204862No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13330.4475256832068757No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9500.31894178473108176No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8320.27932585778553687No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7000.23500973611763915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6800.22829517222856377No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6380.2141945880615054No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5780.1940508963942792No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG5530.18565769153293493No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5480.1839790505606661No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5200.17457866111596052No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5160.17323574833814542No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4800.1611495333378097No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4560.1530920566709192No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4480.15040623111528906No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4370.1467132209762976No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4210.14134156986503726No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4160.13966292889276843No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4140.13899147250386087No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4090.13731283153159202No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3980.13361982139260054No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG3950.13261263680923924No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC3910.13126972403142417No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3780.12690525750352516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3750.12589807292016383No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA3740.12556234472571007No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3690.12388370375344122No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3550.11918350903108843No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG3400.11414758611428188No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA3210.10776875041966023No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3090.10374001208621501No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA2980.10004700194722353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)