FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419960
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13700.326221544909039No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12530.29836174873797505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12400.29526621583007906No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9980.23764168016001522No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG9210.2193066006286313No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8870.21121059148490334No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8730.20787694066101534No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8490.20216211067720738No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7940.1890656252976474No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7190.17120678159824745No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6760.1609677112105915No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6500.1547766453947995No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6320.15049052290694354No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5980.14239451376321555No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAATCG5800.13810839127535957No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5740.13667968377940756No Hit
CTCCAGGGTCGCGACGGTGTTTTCGATTGCTTCCGTAGTCGGGG5490.13072673587960756No Hit
ACGCAGCTGTTGCGCCTGAACGGTACCGTGACCGTAAGAGCCTA5450.1297742642156396No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG5000.11905895799599962No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4710.11215353843223165No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4330.10310505762453567No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4290.10215258596056767No Hit
GGTCGGGGTGCTGGTTGGTTCACCAGAGGCGATGGTGTTGATAG4220.10048576054862367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)