FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419960
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33180.7900752452614535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22110.5264787122583103No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19390.46171063910848653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18180.43289837127345465No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10810.2574054671873512No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9280.2209734260405753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9000.2143061243927993No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC8890.21168682731688734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8810.20978188398895134No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.1897799790456234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.18811315363367942No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7020.16715877702638346No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.16144394704257548No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.15072864082293552No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT6120.14572816458710355No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC5900.14048957043527954No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5650.13453662253547957No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATG5560.13239356129155158No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5090.1212020192399276No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC5030.11977331174397561No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4930.11739213258405562No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC4700.11191542051623965No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG4490.10691494428040765No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4380.10429564720449566No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4330.10310505762453567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)