FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417023
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19590.46975826273371013No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19070.4572889265100486No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11740.2815192447418967No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10080.24171328679713108No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8370.20070835421547492No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7760.18608086364541046No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6160.14771367526491344No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5900.14147900715308268No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5190.12445356730923715No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4850.11630053977838153No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4830.11582094992362531No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4720.11318320572246615No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4700.11270361586770994No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4660.11174443615819751No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4610.11054546152130698No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4490.1076679223927697No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4460.10694853761063537No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4350.10431079340947622No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4280.10263222891782947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)