FastQCFastQC Report
Sun 21 May 2023
EGAF00007941412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471724
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14440.3061112006173101No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13860.2938158753847589No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11490.24357463262416157No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9120.1933333898635643No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8030.1702266579610111No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7820.16577490227336322No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7080.1500877631835565No Hit
TTCAACTTTCGGGCTCGGCGGCAGGATTGCACCGGTCTGTTTTT5760.1221052988611985No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5470.11595763624492289No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4910.10408628774452858No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4840.10260236918197929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)