FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471724
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51131.083896515759215No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31670.6713671553705133No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16510.34999279239555336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15120.3205264095106461No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11850.2512062138029865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9190.19481730842611358No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7670.1625950767821862No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG5770.12231728722727697No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5690.1206213802986492No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5000.1059941830392348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)