FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451427
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24090.5336410981177466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9000.19936778260936983No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6800.15063343574930166No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5510.12205738690862532No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4950.1096522804351534No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4680.10367124695687233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4520.10012693082159464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)