FastQCFastQC Report
Sun 21 May 2023
EGAF00007941418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459556
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12090.26308001636362055No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10600.230657417159171No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10240.22282376902923695No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9700.21107329683433573No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9280.20193404068274595No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8650.18822515645536125No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8180.1779978936190584No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7880.17146985351077995No Hit
GGAGCGGCCGAATGCCAGACCCGGGTAATCCGCGCAACGACCTT7340.15971938131587882No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6000.1305608021655685No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5840.12707918077448668No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5640.12272715403563439No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5630.12250955269869179No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5350.11641671526429857No Hit
GGACGCTGCAGACGCTTCGGAGCCTTTTTTCGGAGACAGCGGAA5080.110541479166848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)