FastQCFastQC Report
Wed 31 May 2023
EGAF00007941419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459556
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25440.5535778011820105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24690.5372577009113144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12340.26852004978718585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11140.2424078893540722No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10760.23413903855025284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10000.21760133694261416No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8040.1749514749018618No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7840.1705994481630095No Hit
ATCGACGAAGGCATTGCACTGGCTGACGATG7150.15558495591396915No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC7090.15427934789231346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.13469522756747818No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5920.1288199914700276No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5730.12468556606811793No Hit
GATGACGTAGCACCGGGTCCGGCGATTAAAG5060.11010627649296277No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4960.10793026312353664No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4700.10227262836302867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)