FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57401.3177408320592112No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA55851.2821572381621418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35470.814290371309063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31680.7272827449413903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28000.6428004058825421No Hit
GAATGCGACAACTATCGCCAGGAATACGATA13690.31428348416185714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12520.28742361005890804No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11610.26653259686772546No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9390.21556770754418103No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8730.20041598369123542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8690.19949769739711748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7950.182509400955936No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7740.17768839791181698No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7030.16138881619122394No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.14830323650004362No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6370.1462370923382783No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6170.14164566086768873No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.14141608929415925No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.13636551467651067No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5700.13085579691180318No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5430.12465736442650724No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5260.12075464767650611No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5220.11983636138238819No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5120.11754064564709339No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4770.10950564057356162No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4770.10950564057356162No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.10606206697061943No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4560.10468463752944254No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4450.10215935022061828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)