FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497711
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34010.6833282768514258No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16220.3258919332705124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11590.23286606082646355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8580.1723891977472871No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7650.15370365533411962No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.1420503063022517No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6490.13039695727038383No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6460.129794197837701No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.129794197837701No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6170.12396752332176704No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6140.12336476388908421No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5710.11472521202063043No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5670.11392153277705334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5260.10568382053038812No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5110.102670023366974No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5060.10166542431250263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)