FastQCFastQC Report
Wed 31 May 2023
EGAF00007941424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441645
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14960.3387335982519897No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13610.30816606097657623No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13520.3061282251582153No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11180.2531444938808319No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9590.217142727756456No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9520.21555774434217528No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8860.20061361500752867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7740.17525388037903747No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7660.17344247076271666No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7490.16959322532803497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6510.14740345752810516No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6440.14581847411382445No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6230.14106352387098237No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5550.12566654213225556No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5480.12408155871797485No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5310.12023231328329315No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4930.11162811760576934No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4910.11117526520168913No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4680.10596746255476684No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4640.10506175774660644No Hit
GTCAGACTGCAGCATGGAGTCGTATACCGCATGAACCAGTTGGA4580.10370320053436585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)