FastQCFastQC Report
Wed 31 May 2023
EGAF00007941425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441645
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35400.8015487552219542No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21060.47685358149645074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19220.43519116032107236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15620.35367772758663635No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13980.3165438304520599No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11830.2678621970134384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10800.24454029820330808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10530.23842679074822537No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9590.217142727756456No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8170.18499020706676175No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.16393257027703245No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6860.15532837459950866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6460.14627132651790464No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5750.13019506617305757No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5710.12928936136489716No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5710.12928936136489716No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5270.11932660847513274No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5200.11774162506085203No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC5120.11593021544453125No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4990.11298667481800995No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4930.11162811760576934No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4700.10642031495884705No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4650.10528818394864654No Hit

[OK]Adapter Content

Adapter graph