FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476587
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29200.6126898131925546No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27070.5679970288740566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17880.37516759794119436No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16720.35082786563628465No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16480.34579205895251025No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14510.3044564790898619No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14340.30088944935552164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12000.25179033418872104No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10970.23017833050418915No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10780.22619165021286772No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9710.20374034541437344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8050.16890934918493372No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7460.15652965775398825No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7240.15191350162719502No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7150.15002507412077964No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6970.1462482191079488No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6870.1441499663230428No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6820.14310083993058978No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6690.14037311131021196No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6290.13198010017058795No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5850.1227477879170015No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5330.11183687343549026No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.10092595895397902No Hit

[OK]Adapter Content

Adapter graph