FastQCFastQC Report
Sun 21 May 2023
EGAF00007941431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470496
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31720.674182139699381No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13170.27991736380330545No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10170.21615486635380537No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9520.2023396585730803No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9460.2010644086240903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.1855488675780453No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.1817231177310753No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7340.15600557709311025No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6610.14049003604706523No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6150.1307131197714752No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6100.1296504114806502No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5410.11498503706726519No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5020.10669591239883018No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4990.10605828742433518No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4930.10478303747534516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)