FastQCFastQC Report
Wed 31 May 2023
EGAF00007941432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458562
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10720.23377427697890363No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT10230.22308869901997985No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9770.21305734011976568No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9670.21087660992406698No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8950.19517535251503615No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8130.1772933649103066No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7970.1738041965971886No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7640.1666077869513828No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6290.13716792930945No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6160.13433298005504163No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5990.13062573872235378No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5780.12604620531138647No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5740.12517391323310698No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5470.11928594170472041No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5260.11470640829375307No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5150.11230760507848449No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4920.1072919256283774No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4830.10532926845224855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)