FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458562
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37980.8282413283263768No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12510.2728093474819109No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10610.23137547376363504No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG9980.21763687353073302No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9880.21545614333503432No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9620.20978624482621758No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9310.20302598121955157No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9000.1962657176128855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8990.19604764459331564No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8290.18078253322342452No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8000.1744584156558982No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6650.14501855801396538No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6370.13891251346600897No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6320.1378221483681596No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6210.135423345152891No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6080.13258839589848265No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5940.12953537362450443No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5160.11252567809805435No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5080.11078109394149536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4600.10031358900214146No Hit

[OK]Adapter Content

Adapter graph