FastQCFastQC Report
Sun 21 May 2023
EGAF00007941437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39710.9027051602636962No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18580.42236872016367355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.3541714025914981No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13460.30597863150716076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11340.25778586042282337No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8110.1843600818367811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6880.15639918163218913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.15162536940213686No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6480.14730620595589905No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6340.14412366446919755No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6310.14344169129347578No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.135485337576722No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5700.12957490338713346No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5520.1254830643328029No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5500.12502841554898841No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4850.11025233007501704No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4660.10593316662877927No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.10502386906115027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4510.10252330075017049No Hit
AAAGAGCTGTACGATTCCCCGTCTGCGCAGC4420.10047738122300523No Hit

[OK]Adapter Content

Adapter graph