FastQCFastQC Report
Wed 31 May 2023
EGAF00007941438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440252
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG17440.3961367580385779No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12920.29346828634509325No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11270.25598975132424157No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10790.24508690477272108No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC10000.22714263649001026No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9930.2255526380345802No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8400.19079981465160864No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7440.16899412154856763No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7180.16308841299982738No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6950.15786413236055713No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6840.155365563359167No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG6680.15173128117532686No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6280.14264557571572645No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5940.1349227260750661No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5370.1219755957951355No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA5030.11425274615447516No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4990.11334417560851513No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4980.1131170329720251No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4460.10130561587454459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)