FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440252
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30880.7014164614811517No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG18290.4154438821402288No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14240.32345111436177465No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11100.25212832650391137No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10650.24190690786186092No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC10060.22850549230895031No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9020.20488265811398923No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8120.18443982082988833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8030.18239553710147824No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7720.17535411537028792No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.16081698663492727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6730.15286699435777693No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC6600.14991414008340678No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6310.14332700362519646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5930.1346955834385761No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5660.12856273225334583No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5310.12061273997619544No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5300.12038559733970544No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC5230.11879559888427536No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4960.1126627476990451No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4860.11039132133414499No Hit
GCACCGCCGGGCTCTCCGGCCCCACCGCCGC4660.1058484686043448No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4550.10334989960295467No Hit

[OK]Adapter Content

Adapter graph