FastQCFastQC Report
Wed 31 May 2023
EGAF00007941441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446505
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27400.6136549422738827No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12540.28084791883629523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9510.21298753653374541No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8360.1872319458908635No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6560.14691884749330916No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6380.14288753765355372No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5260.11780383198396434No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.116236100379615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)