FastQCFastQC Report
Sun 21 May 2023
EGAF00007941443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399049
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36080.9041496157113537No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24700.6189716049908658No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13650.342063255389689No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10180.25510651574117466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9520.23856719350255234No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8150.20423557006783627No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7670.19220697207611095No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7360.18443850253978836No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5310.1330663652834614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5030.12604968312162165No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4790.120035384125759No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4720.11828121358529904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4110.10299487030414811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)