FastQCFastQC Report
Sun 21 May 2023
EGAF00007941445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14820.3556370390456833No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8210.1970162004429865No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7970.19125689616694305No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7590.18213799772987424No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6800.1631802878212312No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6680.16030063568320946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6210.14902199814262437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5660.1358235925100248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5560.1334238823950067No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4250.10198767988826948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)