FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436902
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12080.2764922110679283No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11240.25726593149035715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9480.2169822980897318No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6730.15403912090125474No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6490.14854589816480585No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5990.13710168413053728No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5130.11741763599159537No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4940.11306883465857331No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4880.11169552897446108No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4860.11123776041309034No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4810.1100933390096635No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4680.10711784336075367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)