FastQCFastQC Report
Wed 31 May 2023
EGAF00007941449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26710.6113499137106262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11230.25703704720967174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8070.18470961451309448No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6950.1590745750763329No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6890.15770126939222068No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6870.15724350083084992No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6240.14282379114767157No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6210.14213713830561545No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6060.13870387409533488No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5210.11924871023707834No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4990.11421325606200017No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4940.11306883465857331No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4920.11261106609720259No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4870.11146664469377572No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4680.10711784336075367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)