FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355359
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31640.8903672061211337No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12110.34078213862600915No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9430.26536544733635564No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8510.2394761354011014No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7520.2116169845142518No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7230.20345622314335643No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.16912474427269325No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.15336603265992982No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5070.1426726212084118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4980.1401399711277891No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4980.1401399711277891No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4900.13788872661168No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4210.11847174266023937No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4110.11565768701510303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4010.11284363136996672No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3890.10946676459580311No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC3800.10693411451518044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)