FastQCFastQC Report
Sun 21 May 2023
EGAF00007941454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358018
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16680.46589836265215717No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16520.4614293136099302No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14310.3997005737141708No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12940.36143434129010277No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12900.36031707902954596No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11180.3122748018256065No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8760.24468043506192427No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7880.22010066532967615No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7850.2192627186342586No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7710.21535230072231007No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7620.21283846063605744No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6630.1851862196872783No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5770.16116508108530858No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5770.16116508108530858No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5740.16032713438989102No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5640.1575339787384992No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5540.15474082308710735No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5190.14496477830723595No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5050.14105436039528738No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4980.1390991514393131No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4950.13826120474389555No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4670.13044036891999844No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4410.12317816422637967No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4340.1212229552704054No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4180.11675390622817848No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4100.11451938170706502No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4010.11200554162081236No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG3680.10278812797121933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)